Vosegaard, T., 2018. Fast simulations of multidimensional NMR spectra of proteins and peptides. Magnetic Resonance in Chemistry, 56(6), pp.438-448. Read full text >>
von Loeffelholz, O., Papai, G., Danev, R., Myasnikov, A.G., Natchiar, S.K., Hazemann, I., Ménétret, J.F. and Klaholz, B.P., 2018. Volta phase plate data collection facilitates image processing and cryo-EM structure determination. Journal of Structural Biology, 202(3), pp.191-199. Read full text >>
Natchiar, S.K., Myasnikov, A.G., Kratzat, H., Hazemann, I. and Klaholz, B.P., 2017. Visualization of chemical modifications in the human 80S ribosome structure. Nature, 551(7681), pp.472-477. Read full text >>
Faridounnia, M., Folkers, G.E. and Boelens, R., 2018. Function and interactions of ERCC1-XPF in DNA damage response. Molecules, 23(12), p.3205. Read full text >>
Cerofolini, L., Giuntini, S., Barbieri, L., Pennestri, M., Codina, A., Fragai, M., Banci, L., Luchinat, E. and Ravera, E., 2019. Real-time insights into biological events: in-cell processes and protein-ligand interactions. Biophysical Journal, 116(2), pp.239-247. Read full text >>
Jiménez, A., Jonic, S., Majtner, T., Otón, J., Vilas, J.L., Maluenda, D., Mota, J., Ramírez-Aportela, E., Martínez, M., Rancel, Y., Segura, J., Sánchez-García, R., Melero, R., del Cano, L., Conesa, P., Skjaerven, L., Marabini, R., Carazo, J.M. and Sorzano, C.O.S., 2019. Validation of electron microscopy initial models via small angle X-ray scattering curves. Bioinformatics, 35(14), pp.2427-2433. Read full text >>
Fan, H., Walker, A.P., Carrique, L., Keown, J.R., Martin, I.S., Karia, D., Sharps, J., Hengrung, N., Pardon, E., Steyaert, J., Grimes, J.M. and Fodor, E., 2019. Structures of influenza A virus RNA polymerase offer insight into viral genome replication. Nature, 573(7773), pp.287-290. Read full text >>
Andronov, L., Ouararhni, K., Stoll, I., Klaholz, B.P. and Hamiche, A., 2019. CENP-A nucleosome clusters form rosette-like structures around HJURP during G1. Nature Communications, 10(1), pp.1-8. Read full text >>
Klaholz, B.P., 2019. Deriving and refining atomic models in crystallography and cryo-EM: the latest Phenix tools to facilitate structure analysis. Acta Crystallographica Section D: Structural Biology, 75(10), pp.878-881. Read full text >>
Maluenda, D., Majtner, T., Horváth, P., Vilas, J.L., Jiménez-Moreno, A., Mota, J., Ramírez-Aportela, E., Sánchez-García, R., Conesa, P., del Cano, L., Rancel, Y., Fonseca, Y., Martínez, M., Sharov, G., García, C. A., Strelak, D., Melero, R., Marabini, R., Carazo, J.M. and Sorzano C.O.S., 2019. Flexible workflows for on-the-fly electron-microscopy single-particle image processing using Scipion. Acta Crystallographica Section D: Structural Biology, 75(10), pp.882-894. Read full text >>
Ramírez-Aportela, E., Mota, J., Conesa, P., Carazo, J.M. and Sorzano, C.O.S., 2019. DeepRes: a new deep-learning-and aspect-based local resolution method for electron-microscopy maps. IUCrJ, 6(6), pp.1054-1063. Read full text >>
Uchanski, T., Masiulis, S., Fischer, B., Kalichuk, V., Wohlkonig, A., Zogg, T., Remaut, H., Vranken, W., Aricescu, A.R., Pardon, E. and Steyaert, J., 2019. Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM. bioRxiv. Read full text >>
Schirò, A., Carlon, A., Parigi, G., Murshudov, G., Calderone, V., Ravera, E. and Luchinat, C., 2020. On the complementarity of X-ray and NMR data. Journal of Structural Biology: X, 4, p.100019. Read full text >>
Boisbouvier, J. and Kay, L.E., 2018. Advanced isotopic labeling for the NMR investigation of challenging proteins and nucleic acids. Journal of Biomolecular NMR, 71, p.115–117. Read full text >>
Sanchez-Garcia, R., Segura, J., Maluenda, D., Sorzano, C.O.S. and Carazo, J.M., 2020. MicrographCleaner: a python package for cryo-EM micrograph cleaning using deep learning. Journal of Structural Biology, p.107498. Read full text >>
Ravera, E., Fragai, M., Parigi, G. and Luchinat, C., 2020. Different flavors of diffusion in paramagnetic systems: Unexpected NMR signal intensity and relaxation enhancements. Journal of Magnetic Resonance Open, 2, p.100003. Read full text >>
Luchinat, E., Barbieri, L., Campbell, T.F. and Banci, L., 2020. Real-Time Quantitative In-Cell NMR: Ligand Binding and Protein Oxidation Monitored in Human Cells Using Multivariate Curve Resolution. Analytical Chemistry, 92(14), pp.9997-10006. Read full text >>
Střelák, D., Filipovič, J., Jiménez-Moreno, A., Carazo, J.M. and Sorzano, C.O.S., 2020. FlexAlign: An Accurate and Fast Algorithm for Movie Alignment in Cryo-Electron Microscopy. Electronics, 9(6), p.1040. Read full text >>
Cerofolini, L., Ravera, E., Bologna, S., Wiglenda, T., Böddrich, A., Purfürst, B., Benilova, I., Korsak, M., Gallo, G., Rizzo, D., Gonnelli, L., Fragai, M., De Strooper, B., Wanker, E.E., and Luchinat, C., 2020. Mixing Aβ (1–40) and Aβ (1–42) peptides generates unique amyloid fibrils. Chemical Communications, 56(62), pp.8830-8833. Read full text >>
Srivastava, D.J., Vosegaard, T., Massiot, D. and Grandinetti, P.J., 2020. Core Scientific Dataset Model: A lightweight and portable model and file format for multi-dimensional scientific data. PLOS ONE, 15(1), p.e0225953. Read full text >>
Ramírez-Aportela, E., Vilas, J.L., Glukhova, A., Melero, R., Conesa, P., Martínez, M., Maluenda, D., Mota, J., Jiménez, A., Vargas, J., Marabini, R., Sexton, P.M., Carazo, J.M. and Sorzano, C.O.S., 2020. Automatic local resolution-based sharpening of cryo-EM maps. Bioinformatics, 36(3), pp.765-772. Read full text >>
Lang, L., Ravera, E., Parigi, G., Luchinat, C. and Neese, F., 2020. Solution of a Puzzle: High-Level Quantum-Chemical Treatment of Pseudocontact Chemical Shifts Confirms Classic Semiempirical Theory. The Journal of Physical Chemistry Letters, 11(20), pp.8735-8744. Read full text >>
Tan, Y.Z., Rodrigues, J., Keener, J.E., Zheng, R.B., Brunton, R., Kloss, B., Giacometti, S.I., Rosário, A.L., Zhang, L., Niederweis, M.,Clarke, O.B., Lowary, T.L., Marty, M.T., Archer, M., Potter, C.S., Carragher B. and Mancia,F., 2020. Cryo-EM structure of arabinosyltransferase EmbB from Mycobacterium smegmatis. Nature Communications, 11(1), pp.1-10. Read full text >>
Scholl, D., Sigoillot, M., Overtus, M., Martinez, R.C., Martens, C., Wang, Y., Pardon, E., Laeremans, T., Garcia-Pino, A., Steyaert, J., Sheppard, D.N., Hendrix, J. and Govaerts C., 2020. A Topological Switch Enables Misfolding of the Cystic Fibrosis Transmembrane Conductance Regulator. bioRxiv. Read full text >>
Sorzano, C.O.S., de Isidro-Gómez, F., Fernandez-Gimenez, E., Herreros, D., Marco, S., Carazo, J.M. and Messaoudi, C., 2020. Improvements on marker-free images alignment for electron tomography. bioRxiv. Read full text >>
Melero, R., Sorzano, C.O.S., Foster, B., Vilas, J.L., Martínez, M., Marabini, R., Ramírez-Aportela, E., Sanchez-Garcia, R., Herreros, D., Del Caño, L., Losana, P., Fonseca-Reyna, Y.C., Conesa, P., Wrapp, D., Chacon, P., McLellan, J.S., Tagare H.D. and Carazo, J.M., 2020. Continuous flexibility analysis of SARS-CoV-2 Spike prefusion structures. IUCrJ, 7(6). Read full text >>
Sorzano, C.O.S., Crisman, E., Carazo, J.M. and León, R., 2020. Multitarget virtual screening for drug repurposing in COVID19. ChemRxiv. Read full text >>
Törner, R., Awad, R., Gans, P., Brutscher, B. and Boisbouvier, J., 2020. Spectral editing of intra-and inter-chain methyl–methyl NOEs in protein complexes. Journal of Biomolecular NMR, 74(1), pp.83-94. Read full text >>
De Zitter, E., Ridard, J., Thédié, D., Adam, V., Lévy, B., Byrdin, M., Gotthard, G., Van Meervelt, L., Dedecker, P., Demachy, I. and Bourgeois, D., 2020. Mechanistic investigations of green mEos4b reveal a dynamic long-lived dark state. Journal of the American Chemical Society. 142(25), pp10978–10988. Read full text >>
Luchinat, E., Barbieri, L., Cremonini, M., Nocentini, A., Supuran, C.T. and Banci, L., 2020. Drug Screening in Human Cells by NMR Spectroscopy Allows the Early Assessment of Drug Potency. Angewandte Chemie International Edition, 59(16), pp.6535-6539. Read full text >>
Juraszek, J., Rutten, L., Blokland, S., Bouchier, P., Voorzaat, R., Ritschel, T., Bakkers, M.J., Renault, L.L. and Langedijk, J.P., 2020. Stabilizing the Closed SARS-CoV-2 Spike Trimer. bioRxiv. Read full text >>
Vilas, J.L., Oton, J., Messaoudi, C., Melero, R., Conesa, P., Ramirez-Aportela, E., Mota, J., Martinez, M., Jimenez, A., Marabini, R., Carazo, J.M., Vargas, J. and Sorzano, C.O.S., 2020. Measurement of local resolution in electron tomography. Journal of Structural Biology: X, 4, p.100016. Read full text >>
Aarestrup, F.M., Albeyatti, A., Armitage, W.J., Auffray, C., Augello, L., Balling, R., Benhabiles, N., Bertolini, G., Bjaalie, J.G., Black, M., Blomberg, N., Bogaert, P., Bubak, M., Claerhout, B., Clarke, L., De Meulder, B., D’Errico, G., Di Meglio, A., Forgo, N., Gans-Combe, C., Gray, A.E., Gut, I., Gyllenberg, A., Hemmrich-Stanisak, G., Hjorth, L., Ioannidis, Y., Jarmalaite, S., Kel, A., Kherif, F., Korbel, J.O., Larue, C., Laszlo, M., Maas, A., Magalhaes, L., Manneh-Vangramberen, I., Morley-Fletcher, E., Ohmann, C., Oksvold, P., Oxtoby, N.P., Perseil, I., Pezoulas, V., Riess, O., Riper, H., Roca, J., Rosenstiel, P., Sabatier, P., Sanz, F., Tayeb, M., Thomassen, G., Van Bussel, J., Van den Bulcke M. and Van OyenH., 2020. Towards a European health research and innovation cloud (HRIC). Genome Medicine, 12(1), pp.1-14. Read full text >>
Ramirez-Aportela, E., Maluenda, D., Fonseca, Y.C., Conesa, P., Marabini, R., Heymann, J.B., Carazo, J.M. and Sorzano, C.O.S., 2020. FSC-Q: A CryoEM map-to-atomic model quality validation based on the local Fourier Shell Correlation. bioRxiv. Read full text >>
Kolesnikova, O., Radu, L. and Poterszman, A., 2019. TFIIH: A multi-subunit complex at the cross-roads of transcription and DNA repair. In Advances in Protein Chemistry and Structural Biology (Vol. 115, pp. 21-67). Academic Press. Read full text >>
Imbert, L., Lenoir-Capello, R., Crublet, E., Vallet, A., Awad, R., Ayala, I., Juillan-Binard, C., Mayerhofer, H., Kerfah, R., Gans, P., Miclet, E. and Boisbouvier, J., In Vitro Production of Perdeuterated Proteins in H 2 O for Biomolecular NMR Studies. In Structural Genomics (pp. 127-149). Humana, New York, NY. Read full text >>
